Quackenbush, John F: search on Z-Library

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1

Data Analysis Strategies in Medical Imaging

Parmar, Chintan, Barry, Joseph D., Hosny, Ahmed, Quackenbush, John, Aerts, Hugo JWL

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 498 KB

english, 2018

2

Artificial intelligence in radiology

Hosny, Ahmed, Parmar, Chintan, Quackenbush, John, Schwartz, Lawrence H., Aerts, Hugo J. W. L.

Journal:

Nature Reviews Cancer

Year:

2018

Language:

english

File:

PDF, 945 KB

english, 2018

3

Longitudinal study of the impacts of land cover change on hydrologic response in four mesoscale watersheds in New York State, USA

Shaw, Stephen B., Marrs, John, Bhattarai, Nishan, Quackenbush, Lindi

Journal:

Journal of Hydrology

Year:

2014

Language:

english

File:

PDF, 2.27 MB

english, 2014

4

Inconsistency in large pharmacogenomic studies

Haibe-Kains, Benjamin, El-Hachem, Nehme, Birkbak, Nicolai Juul, Jin, Andrew C., Beck, Andrew H., Aerts, Hugo J. W. L., Quackenbush, John

Journal:

Year:

2013

Language:

english

File:

PDF, 2.02 MB

english, 2013

5

High-Throughput Sequencing in Respiratory, Critical Care, and Sleep Medicine Research. An Official American Thoracic Society Workshop Report

Hersh, Craig P., Adcock, Ian M., Celedón, Juan C., Cho, Michael H., Christiani, David C., Himes, Blanca E., Kaminski, Naftali, Mathias, Rasika A., Meyers, Deborah A., Quackenbush, John, Redline, Susan

Journal:

Annals of the American Thoracic Society

Year:

2019

Language:

english

File:

PDF, 663 KB

english, 2019

6

Swimbladder Leiomyosarcoma in Atlantic Salmon (Salmo salar) in North America

Bowser, Paul R., Casey, James W., Casey, Rufina N., Quackenbush, Sandra L., Lofton, Larry, Coll, John A., Cipriano, Rocco C.

Journal:

Journal of Wildlife Diseases

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

7

Measurement of electro-optic properties of ferroelectric thin films using the ultimate ellipsometer

Teowee, G., Baertlein, C. D., Simpson, John T., Zhao, Tianji, Mansuripur, M., Quackenbush, E. L., Boulton, J. M., Uhlmann, D. R.

Journal:

Integrated Ferroelectrics

Year:

1995

Language:

english

File:

PDF, 567 KB

english, 1995

8

Observations of Landslides Caused by the April 2015 Gorkha, Nepal, Earthquake Based on Land, UAV, and Satellite Reconnaissance

Zekkos, Dimitrios, Clark, Marin, Whitworth, Michael, Greenwood, William, West, A. Joshua, Roback, Kevin, Li, Gen, Chamlagain, Deepak, Manousakis, John, Quackenbush, Paul, Medwedeff, William, Lynch, Je

Journal:

Earthquake Spectra

Year:

2017

File:

PDF, 1.94 MB

2017

9

Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology

Wu, Weimiao, Parmar, Chintan, Grossmann, Patrick, Quackenbush, John, Lambin, Philippe, Bussink, Johan, Mak, Raymond, Aerts, Hugo J. W. L.

Journal:

Frontiers in Oncology

Year:

2016

Language:

english

File:

PDF, 8.54 MB

english, 2016

10

Technical improvement in permanent seed implantation: a two-stage brachytherapy system. Description and comparison with current technique

Peter D Grimm, John C Blasko, John E Sylvester, Charles Heaney, James Gasparich, Jeffrey Quackenbush, Jim Gottesman, Jim Downey, Doug Grier, Tim Roddy, Roger Nellans, Narender Sood, David Wahl

Journal:

Year:

2004

Language:

english

File:

PDF, 351 KB

english, 2004

11

Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly

Scott C. Fahrenkrug, Timothy P.L. Smith, Brad A. Freking, Jennifer Cho, Joseph White, Jeff Vallet, Tommy Wise, Gary Rohrer, Geo Pertea, Razvan Sultana, John Quackenbush, John W. Keele

Journal:

Mammalian Genome

Year:

2002

Language:

english

File:

PDF, 97 KB

english, 2002

12

Extracting meaning from functional genomics experiments

John Quackenbush

Journal:

Toxicology and Applied Pharmacology

Year:

2005

Language:

english

File:

PDF, 95 KB

english, 2005

13

Multiple-input multiple-output causal strategies for gene selection

Gianluca Bontempi, Benjamin Haibe-Kains, Christine Desmedt, Christos Sotiriou, John Quackenbush

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 465 KB

english, 2011

14

Microarray Analysis and Tumor Classification

Quackenbush, John

Journal:

Boston Medical and Surgical Journal

Year:

2006

Language:

english

File:

PDF, 766 KB

english, 2006

15

Perspective: Learning to share

Quackenbush, John

Journal:

Year:

2014

Language:

english

File:

PDF, 704 KB

english, 2014

16

Relevance of different prior knowledge sources for inferring gene interaction networks

Olsen, Catharina, Bontempi, Gianluca, Emmert-Streib, Frank, Quackenbush, John, Haibe-Kains, Benjamin

Journal:

Frontiers in Genetics

Year:

2014

Language:

english

File:

PDF, 2.36 MB

english, 2014

17

Report of Subcommittee D on Recommendations for Official Methods

Kissinger, John C, George, Elmer, Quackenbush, Forrest W, Krinitz, Benjamin, Ruggles, Dennis

Journal:

Journal of AOAC International

Year:

1976

File:

PDF, 372 KB

1976

18

Use of the Rat Gene Index to examine gene expression patterns from Src-transformed rat fibroblasts that exhibit broad differences in metastatic potential

Malek, Renae L., Guo, Qingbin, Ruffy, Mauro, Liu, Edison T., Holt, Ingeborg, Chandra, Ishwar, Liang, Feng, Upton, Jonathan, Quackenbush, John, Jove, Richard, Yeatman, Timothy J., Lee, Norman H.

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 91 KB

english, 1999

19

Inference and validation of predictive gene networks from biomedical literature and gene expression data

Olsen, Catharina, Fleming, Kathleen, Prendergast, Niall, Rubio, Renee, Emmert-Streib, Frank, Bontempi, Gianluca, Haibe-Kains, Benjamin, Quackenbush, John

Journal:

Year:

2014

Language:

english

File:

PDF, 526 KB

english, 2014

20

Multistrain Genetic Comparisons Reveal CCR5 as a Receptor Involved in Airway Hyperresponsiveness

Walker, Julia K. L., Ahumada, Adriana, Frank, Bryan, Gaspard, Renee, Berman, Katherine, Quackenbush, John, Schwartz, David A.

Journal:

American Journal of Respiratory Cell and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 472 KB

english, 2006

21

PyPanda: a Python package for gene regulatory network reconstruction

van IJzendoorn, David G.P., Glass, Kimberly, Quackenbush, John, Kuijjer, Marieke L.

Journal:

Year:

2016

Language:

english

File:

PDF, 103 KB

english, 2016

22

Report of Subcommittee D on Recommendations for Official Methods

Quackenbush, Forrest W, Kissinger, John C, George, Elmer, Krinitz, Benjamin, Ruggles, Dennis

Journal:

Journal of AOAC International

Year:

1980

File:

PDF, 419 KB

1980

23

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] C109. 'OMICS APPROACHES TO LUNG DISEASES - Genome-Wide Analysis Of Somatic Genetic Alterations In Severe Lung Disease

Coldren, Christopher D., Gao, Bifing, Rice, Jessica L., Leach, Sonia, Yang, Ivana V., Murphy, Elissa, Kaminski, Naftali, Quackenbush, John, Schwartz, David A., Sciurba, Frank C., Spira, Avrum, Geraci,

Year:

2011

File:

PDF, 18 KB

2011

24

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] D37. SYSTEMS BIOLOGY AND MOLECULAR PROFILING IN PULMONARY HEALTH AND DISEASE - MRNA And MicroRNA Expression Profiles Indicate Disease Severity In Patients With Idiopathic Pulmonary Fibrosis

Juan-Guardela, Brenda, Tedrow, John, Herazo, Jose D., Aboud, Caroline, Pandit, Kusum, Chensny, Lara, Gur, David, Leader, Joseph K., Benos, Panayiotis, Richards, Thomas, Correll, Mick, Quackenbush, Joh

Year:

2011

File:

PDF, 20 KB

2011

25

Top-down standards will not serve systems biology

Quackenbush, John, Stoeckert, Christian, Ball, Catherine, Brazma, Alvis, Gentleman, Robert, Huber, Wolfgang, Irizarry, Rafael, Salit, Marc, Sherlock, Gavin, Spellman, Paul

Journal:

Year:

2006

Language:

english

File:

PDF, 120 KB

english, 2006

26

An STS Content Map of Human Chromosome 11: Localization of 910 YAC Clones and 109 Islands

JOHN QUACKENBUSH, CHRISTOPHER DAVIES, JULIE M. BAILIS, JASON V. KHRISTICH, KARIN DIGGLE, YELENA MARCHUCK, JOSHUA TOBIN, STEPHEN P. CLARK, ANNIE RODKINS, STEWART MARCANO, ALLAN C. CHURUKIAN, JANE S. HU

Journal:

Year:

1995

Language:

english

File:

PDF, 179 KB

english, 1995

27

Mutational analysis clopidogrel resistance and platelet function in patients scheduled for coronary artery bypass grafting

Correll, Mick, Johnson, Christopher K., Ferrari, Giovanni, Brizzio, Mariano, Mak, Andrew W.C., Quackenbush, John, Shaw, Richard E., Zapolanski, Alex, Grau, Juan B.

Journal:

Year:

2013

Language:

english

File:

PDF, 392 KB

english, 2013

28

CXCR4 pathway associated with family history of melanoma

Li, Wen-Qing, Han, Jiali, Widlund, Hans R., Correll, Mick, Wang, Yaoyu E., Quackenbush, John, Mihm, Martin C., Canales, Alvaro Laga, Wu, Shaowei, Golub, Todd, Hoshida, Yujin, Hunter, David J., Murphy,

Journal:

Cancer Causes & Control

Year:

2014

Language:

english

File:

PDF, 443 KB

english, 2014

29

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 • Denver Colorado - ()] C22. PATHOBIOLOGY OF COPD: LESSONS FROM INFLAMMATORY MECHANISMS AND GENOMIC STUDIES - Microrna Expression Profiles In Emphysema

Tedrow, John, Juan-Guardela, Brenda, Pandit, Kusum, Gur, David, Leader, Joseph K., Landreneau, Rodney, Schwartz, David A., Geraci, Mark W., Quackenbush, John, Correll, Mick, Richards, Thomas, Chensny,

Year:

2011

Language:

english

File:

PDF, 19 KB

english, 2011

30

Safikhani et al. reply

Safikhani, Zhaleh, El-Hachem, Nehme, Smirnov, Petr, Freeman, Mark, Goldenberg, Anna, Birkbak, Nicolai J., Beck, Andrew H., Aerts, Hugo J. W. L., Quackenbush, John, Haibe-Kains, Benjamin

Journal:

Year:

2016

Language:

english

File:

PDF, 268 KB

english, 2016

31

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

Paulson, Joseph N., Chen, Cho-Yi, Lopes-Ramos, Camila M., Kuijjer, Marieke L., Platig, John, Sonawane, Abhijeet R., Fagny, Maud, Glass, Kimberly, Quackenbush, John

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

32

Cannabis as a Substitute for Opioids

Gonzalez, Charles John, Quackenbush, Nicole, Stancliff, Sharon

Journal:

Year:

2019

Language:

english

File:

PDF, 80 KB

english, 2019

33

Using a Single Daytime Performance Test to Identify Most Individuals at High-Risk for Performance Impairment during Extended Wake

St. Hilaire, Melissa A., Kristal, Bruce S., Rahman, Shadab A., Sullivan, Jason P., Quackenbush, John, Duffy, Jeanne F., Barger, Laura K., Gooley, Joshua J., Czeisler, Charles A., Lockley, Steven W.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 2.26 MB

english, 2019

34

Time-series integrated “omic” analyses to elucidate short-term stress-induced responses in plant liquid cultures

Bhaskar Dutta, Harin Kanani, John Quackenbush, Maria I. Klapa

Journal:

Biotechnology and Bioengineering

Year:

2009

Language:

english

File:

PDF, 1.24 MB

english, 2009

35

HPV16 E7 oncogene expression in normal human epithelial cells causes molecular changes indicative of an epithelial to mesenchymal transition

Karin Hellner, Jessica Mar, Frank Fang, John Quackenbush, Karl Münger

Journal:

Year:

2009

Language:

english

File:

PDF, 531 KB

english, 2009

36

Genes transcribed in the salivary glands of female Rhipicephalus appendiculatus ticks infected with Theileria parva

Vishvanath Nene, Dan Lee, Simon Kang’a, Robert Skilton, Trushar Shah, Etienne de Villiers, Stephen Mwaura, David Taylor, John Quackenbush, Richard Bishop

Journal:

Insect Biochemistry and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 540 KB

english, 2004

37

Integrative and comparative genomics analysis of early hepatocellular carcinoma differentiated from liver regeneration in young and old

Dilek Colak, Muhammad A Chishti, Al-Bandary Al-Bakheet, Ahmed Al-Qahtani, Mohamed M Shoukri, Malcolm H Goyns, Pinar T Ozand, John Quackenbush, Ben H Park, Namik Kaya

Journal:

Molecular Cancer

Year:

2010

Language:

english

File:

PDF, 3.45 MB

english, 2010

38

Discrimination of Non-Protein-Coding Transcripts from Protein-Coding mRNA

Frith, Martin C., Bailey, Timothy L., Kasukawa, Takeya, Mignone, Flavio, Kummerfeld, Sarah K., Madera, Martin, Sunkara, Sirisha, Furuno, Masaaki, Bult, Carol J., Quackenbush, John, Kai, Chikatoshi, Ka

Journal:

Year:

2006

Language:

english

File:

PDF, 816 KB

english, 2006

39

Characterization of carboxypeptidase I of mung bean seeds

Wilson, Karl A., Russell, Mary, Quackenbush, John F., Tan-Wilson, Anna L.

Journal:

Seed Science Research

Year:

1995

Language:

english

File:

PDF, 1.14 MB

english, 1995

40

Aldehyde Dehydrogenase 1B1 as a Modulator of Pancreatic Adenocarcinoma

Singh, Surendra, Arcaroli, John J., Orlicky, David J., Chen, Ying, Messersmith, Wells A., Bagby, Stacey, Purkey, Alicia, Quackenbush, Kevin S., Thompson, David C., Vasiliou, Vasilis

Journal:

Year:

2016

Language:

english

File:

PDF, 357 KB

english, 2016

41

BatchQC: interactive software for evaluating sample and batch effects in genomic data

Manimaran, Solaiappan, Selby, Heather Marie, Okrah, Kwame, Ruberman, Claire, Leek, Jeffrey T., Quackenbush, John, Haibe-Kains, Benjamin, Bravo, Hector Corrada, Johnson, W. Evan

Journal:

Year:

2016

Language:

english

File:

PDF, 137 KB

english, 2016

42

attract: A Method for Identifying Core Pathways That Define Cellular Phenotypes

Mar, Jessica C., Matigian, Nicholas A., Quackenbush, John, Wells, Christine A., Csermely, Peter

Journal:

Year:

2011

Language:

english

File:

PDF, 350 KB

english, 2011

43

Merkel Cell Polyomavirus Small T Antigen Promotes Pro-Glycolytic Metabolic Perturbations Required for Transformation

Berrios, Christian, Padi, Megha, Keibler, Mark A., Park, Donglim Esther, Molla, Vadim, Cheng, Jingwei, Lee, Soo Mi, Stephanopoulos, Gregory, Quackenbush, John, DeCaprio, James A., Kalejta, Robert F.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

44

Cabozantinib exhibits potent antitumor activity in colorectal cancer patient-derived tumor xenograft models via autophagy and signaling mechanisms

Scott, Aaron J, Arcaroli, John J., Bagby, Stacey M., Yahn, Rachel, Huber, Kendra M., Serkova, Natalie J., Nguyen, Anna, Kim, Jihye, Thorburn, Andrew, Vogel, Jon, Quackenbush, Kevin S, Capasso, Anna, S

Journal:

Molecular Cancer Therapeutics

Year:

2018

Language:

english

File:

PDF, 2.89 MB

english, 2018

45

Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism

Lopes-Ramos, Camila M., Kuijjer, Marieke L., Ogino, Shuji, Fuchs, Charles S., DeMeo, Dawn L., Glass, Kimberly, Quackenbush, John

Journal:

Cancer Research

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

46

Identification of genes involved in colon cancer metastasis using cDNA microarrays

Hegde, Priti, Earle-Hughes, Julie, Abernathy, Kristie, Gay, Cheryl, Dharap, Sonia, Saeed, Alexander I., Sharov, #1Vasily, Lee, Norman H., Yeatman, Timothy, Quackenbush, John

Journal:

Nature Genetics

Year:

1999

Language:

english

File:

PDF, 113 KB

english, 1999

47

Biomarker-driven trial in metastatic pancreas cancer: feasibility in a multicenter study of saracatinib, an oral Src inhibitor, in previously treated pancreatic cancer

John Arcaroli, Kevin Quackenbush, Arvind Dasari, Rebecca Powell, Martine McManus, Aik-Choon Tan, Nathan R. Foster, Joel Picus, John Wright, Sujatha Nallapareddy, Charles Erlichman, Manuel Hidalgo, Wel

Journal:

Cancer Medicine

Year:

2012

Language:

english

File:

PDF, 1.13 MB

english, 2012

48

Cancer Informatics: New Tools for a Data-Driven Age in Cancer Research

Kibbe, Warren, Klemm, Juli, Quackenbush, John

Journal:

Cancer Research

Year:

2017

Language:

english

File:

PDF, 205 KB

english, 2017

49

Efficient and Rapid Induction of a Chronic Myelogenous Leukemia-Like Myeloproliferative Disease in Mice Receiving P210 bcr/abl-Transduced Bone Marrow

Pear, Warren S., Miller, Juli P., Xu, Lanwei, Pui, John C., Soffer, Benny, Quackenbush, Robert C., Pendergast, Ann Marie, Bronson, Roderick, Aster, Jon C., Scott, Martin L., Baltimore, David

Journal:

Year:

1998

File:

PDF, 9.39 MB

1998

50

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] C109. 'OMICS APPROACHES TO LUNG DISEASES - Identifying Novel Transcripts And Alternative Splicing Associated With The ILD And COPD Lung Transcriptome Using MRNA-Seq

Brothers, John F., Kusko, Rebecca L., Luo, Lingqi, Liu, Gang, Guardela, Brenda J., Tedrow, John, Alekseyev, Yuriy, Yang, Ivana V., Correll, Mick, Geraci, Mark W., Quackenbush, John, Sciurba, Frank C.,

Year:

2011

File:

PDF, 19 KB

2011

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